(d) Each applicant for a certification, license or permit shall annually file with the department an application providing such information as the department may require and an application fee, not to exceed $20, as set by the department. If an individual files an application with the department to renew a certification, license or permit, which is in effect on the date of the application for renewal, and pays the appropriate fee, such certification, license or permit shall be deemed to be in effect until:
(i) 90 days have elapsed after the certification, license or permit was scheduled to expire; or (ii) the department notifies the applicant that the certification, license or permit has been renewed, modified or denied, whichever occurs first.