All of the provisions of this section shall apply to the refund authorized by this subdivision, provided, however, that interest allowable under subdivision (d) of this section shall be payable in accordance with such subdivision but only from the date the tax, penalty or interest refunded or credited was paid, or was deemed to have been paid, to March thirty-first, nineteen hundred eighty-eight and from the date which is ninety days after the date the application for refund in processible form is received.
N.Y. Tax Law § 1139